PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G196100.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 361aa MW: 39764.1 Da PI: 6.1233

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G196100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.4	1e-26	208	257	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +++l++yF++pi+ AA+e++v+lTvLK++CR++GI+RWPhRk+ksl Seita.5G196100.1.p 208 DHIGFDELRRYFYMPITRAAREMNVGLTVLKKRCRELGIARWPHRKMKSL 257 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.837	197	278	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-21	210	257	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MAMVPYCDGD ADWYHFPPLC PPSPLALLSE GESYYDLPIF PPPPAAGDHQ FFSNQLPPVP 60 VDSATVGLDD ALLQPLGDID LEAFDNADEH KAPHHGRHTM IVPAGQHAVG QEYAGVDVVD 120 DADEKPMAPH HGRHTMVGQE YAGVDGVIVV DDADQKPMAM VDCFLPGANN AFESAMPPPQ 180 PSLPLPARGR RSVDHRSAPA PGGKTRLDHI GFDELRRYFY MPITRAAREM NVGLTVLKKR 240 CRELGIARWP HRKMKSLKSL ILSVQEMGTG MNPAAVQQEL AALETYCALM EENPAIELTE 300 RTKKLRQACF KESYKRRRAA AVNVVDHIFN FDEHQFHHQL PPPPSPSSAE RHGSGSFFGY 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MAMVPYCDGD ADWYHFPPLC PPSPLALLSE GESYYDLPIF PPPPAAGDHQ FFSNQLPPVP  60
VDSATVGLDD ALLQPLGDID LEAFDNADEH KAPHHGRHTM IVPAGQHAVG QEYAGVDVVD  120
DADEKPMAPH HGRHTMVGQE YAGVDGVIVV DDADQKPMAM VDCFLPGANN AFESAMPPPQ  180
PSLPLPARGR RSVDHRSAPA PGGKTRLDHI GFDELRRYFY MPITRAAREM NVGLTVLKKR  240
CRELGIARWP HRKMKSLKSL ILSVQEMGTG MNPAAVQQEL AALETYCALM EENPAIELTE  300
RTKKLRQACF KESYKRRRAA AVNVVDHIFN FDEHQFHHQL PPPPSPSSAE RHGSGSFFGY  360
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G196100.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003933	2e-66	AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBank	AP004258	2e-66	AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBank	AP014957	2e-66	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	2e-66	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971918.1	0.0	uncharacterized protein LOC101757335
TrEMBL	A0A368R6J4	0.0	A0A368R6J4_SETIT; Uncharacterized protein
STRING	Si005102m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12888	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	4e-35	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Seita.5G196100.1.p