PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G220600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20801.3 Da    PI: 4.7551
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G220600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.81.8e-151161151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ie+++  + tf +Rr  ++K A+ELS+L++a+v v++ s++ k+  +s+
  Seita.5G220600.1.p 11 KFIEDERDHSLTFFNRRSRLFKDASELSTLTGARVTVVVESKNKKVSSFST 61
                        79*********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-7262IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.264363IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-5525IPR002100Transcription factor, MADS-box
CDDcd001204.15E-12662No hitNo description
SuperFamilySSF554551.44E-14973IPR002100Transcription factor, MADS-box
PfamPF003191.9E-161259IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-52540IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-54061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MPRRVKRSGV KFIEDERDHS LTFFNRRSRL FKDASELSTL TGARVTVVVE SKNKKVSSFS  60
TPDAGPIVDT FLSEDASTEF NTIKGGKVKS TTLQNESFHL EKSKAVEDNM EENMMQAKDI  120
QETSRMAKYV YGKVEDLNAT ELIEMCSKLS EIEQEIEDLL SINFNSSSSI QESNFGDLNF  180
PWY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G220600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971988.11e-117serum response factor homolog A
TrEMBLA0A368R9761e-131A0A368R976_SETIT; Uncharacterized protein
STRINGSi003888m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-08AGAMOUS-like 61