PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G226900.2.p
Common NameSETIT_000968mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 395aa    MW: 42904 Da    PI: 8.4754
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G226900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-067197127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C++  ++ tC++ +rCkF+H++
  Seita.5G226900.2.p 71 PGEPDCPYLVKSNTCRFKSRCKFNHPK 97
                        5789*********************96 PP
2zf-CCCH40.54.7e-13126150327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C+f+a+tG Ck+G++CkF+H++
  Seita.5G226900.2.p 126 EPVCSFYAKTGKCKFGANCKFNHPM 150
                         789********************95 PP
3zf-CCCH375.8e-12200225126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C+f+++tG CkyG+ C+F+H+
  Seita.5G226900.2.p 200 PGEVDCSFYMKTGSCKYGSICRFNHP 225
                         57899********************9 PP
4zf-CCCH34.53.4e-11285310227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++  C+f+++tG+Cky  +CkF+H++
  Seita.5G226900.2.p 285 GETVCDFYMKTGFCKYSQKCKFHHPM 310
                         6789********************95 PP
5zf-CCCH35.32e-11341364427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         e C f++r+GtC+yG+ CkF H+p
  Seita.5G226900.2.p 341 EACAFYMRSGTCRYGAHCKFDHPP 364
                         78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.537097IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6717098IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-47297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.277123151IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7123150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6123151IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10126150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5128148IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788199227IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9201225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5203227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4205224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732283311IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6283310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-7284312IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-9285310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5288308IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065337365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6340365IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9341364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5341362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MASVPSTRTS ALSTLAWAPS TRTLAPSTRT LAPSTRTSAP STRALVLSIR ASVRGDPRKV  60
PNVEDYYPER PGEPDCPYLV KSNTCRFKSR CKFNHPKEKV NALEAGTDNE HSLIADSAIL  120
PVRPSEPVCS FYAKTGKCKF GANCKFNHPM PSVIAKETIY TATTDAAAHI GAADDLVPAK  180
MHAPTAPSEA HNPKGLPIRP GEVDCSFYMK TGSCKYGSIC RFNHPYRPVV DIALIAPLVQ  240
TTLPTPAPII SAPMLNPATN VLQSFDFHVT HVPIEPVPIY PQRPGETVCD FYMKTGFCKY  300
SQKCKFHHPM NRSEPGANGN WDPEQPVTLT LAGLPRREGA EACAFYMRSG TCRYGAHCKF  360
DHPPPQEAIA KLQAAGKEDE EKKEGEAKEG SVVP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G226900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969171.10.0zinc finger CCCH domain-containing protein 8
SwissprotQ5ZDJ61e-139C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLK3XIP20.0K3XIP2_SETIT; Uncharacterized protein
STRINGSi000968m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-87floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]