PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G226900.4.p
Common NameSETIT_000968mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 346aa    MW: 37704.2 Da    PI: 7.9988
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G226900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.74e-1377101327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C+f+a+tG Ck+G++CkF+H++
  Seita.5G226900.4.p  77 EPVCSFYAKTGKCKFGANCKFNHPM 101
                         789********************95 PP
2zf-CCCH37.24.9e-12151176126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C+f+++tG CkyG+ C+F+H+
  Seita.5G226900.4.p 151 PGEVDCSFYMKTGSCKYGSICRFNHP 176
                         57899********************9 PP
3zf-CCCH34.72.9e-11236261227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++  C+f+++tG+Cky  +CkF+H++
  Seita.5G226900.4.p 236 GETVCDFYMKTGFCKYSQKCKFHHPM 261
                         6789********************95 PP
4zf-CCCH35.51.7e-11292315427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         e C f++r+GtC+yG+ CkF H+p
  Seita.5G226900.4.p 292 EACAFYMRSGTCRYGAHCKFDHPP 315
                         78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-774101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-674102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27774102IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-1077101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-57999IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788150178IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9152176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5154178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4156175IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6234261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732234262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-7235263IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-9236261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5239260IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065288316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6291316IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9292315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5292313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MERPANLTIH NGFQRVGFQT GKRSQTLKII ILSDQGNLIV LCKFNHPKEK VNALEAGTDN  60
EHSLIADSAI LPVRPSEPVC SFYAKTGKCK FGANCKFNHP MPSVIAKETI YTATTDAAAH  120
IGAADDLVPA KMHAPTAPSE AHNPKGLPIR PGEVDCSFYM KTGSCKYGSI CRFNHPYRPV  180
VDIALIAPLV QTTLPTPAPI ISAPMLNPAT NVLQSFDFHV THVPIEPVPI YPQRPGETVC  240
DFYMKTGFCK YSQKCKFHHP MNRSEPGANG NWDPEQPVTL TLAGLPRREG AEACAFYMRS  300
GTCRYGAHCK FDHPPPQEAI AKLQAAGKED EEKKEGEAKE GSVVP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G226900.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969171.10.0zinc finger CCCH domain-containing protein 8
SwissprotQ5ZDJ61e-123C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLK3XJJ90.0K3XJJ9_SETIT; Uncharacterized protein
STRINGSi000968m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.15e-72floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]