PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G226900.5.p
Common NameLOC101768560, SETIT_000968mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 410aa    MW: 45312.6 Da    PI: 7.8592
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G226900.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.4e-123762227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        +++ C f++rt tCkyG+ CkF H++
  Seita.5G226900.5.p 37 REKDCAFYMRTRTCKYGEACKFDHPQ 62
                        6789********************97 PP
2zf-CCCH201.2e-0686112127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C++  ++ tC++ +rCkF+H++
  Seita.5G226900.5.p  86 PGEPDCPYLVKSNTCRFKSRCKFNHPK 112
                         5789*********************96 PP
3zf-CCCH40.44.9e-13141165327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C+f+a+tG Ck+G++CkF+H++
  Seita.5G226900.5.p 141 EPVCSFYAKTGKCKFGANCKFNHPM 165
                         789********************95 PP
4zf-CCCH36.96.1e-12215240126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C+f+++tG CkyG+ C+F+H+
  Seita.5G226900.5.p 215 PGEVDCSFYMKTGSCKYGSICRFNHP 240
                         57899********************9 PP
5zf-CCCH34.43.6e-11300325227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++  C+f+++tG+Cky  +CkF+H++
  Seita.5G226900.5.p 300 GETVCDFYMKTGFCKYSQKCKFHHPM 325
                         6789********************95 PP
6zf-CCCH35.22e-11356379427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         e C f++r+GtC+yG+ CkF H+p
  Seita.5G226900.5.p 356 EACAFYMRSGTCRYGAHCKFDHPP 379
                         78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.46E-63362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6953563IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-43562IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-93762IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-44161IPR000571Zinc finger, CCCH-type
SMARTSM003560.5385112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67185113IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-487112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.277138166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6138166IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7138165IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5143163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788214242IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6214241IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9216240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5218242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4220239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732298326IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6298325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7299327IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-9300325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5303323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065352380IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6352379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6355380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5356377IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9356379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGSHSTVAQN EALYSPNTMA KRPRLESSLP IYPQRPREKD CAFYMRTRTC KYGEACKFDH  60
PQWVPEGGVP NWKEVPNVED YYPERPGEPD CPYLVKSNTC RFKSRCKFNH PKEKVNALEA  120
GTDNEHSLIA DSAILPVRPS EPVCSFYAKT GKCKFGANCK FNHPMPSVIA KETIYTATTD  180
AAAHIGAADD LVPAKMHAPT APSEAHNPKG LPIRPGEVDC SFYMKTGSCK YGSICRFNHP  240
YRPVVDIALI APLVQTTLPT PAPIISAPML NPATNVLQSF DFHVTHVPIE PVPIYPQRPG  300
ETVCDFYMKT GFCKYSQKCK FHHPMNRSEP GANGNWDPEQ PVTLTLAGLP RREGAEACAF  360
YMRSGTCRYG AHCKFDHPPP QEAIAKLQAA GKEDEEKKEG EAKEGSVVP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G226900.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969171.10.0zinc finger CCCH domain-containing protein 8
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A368R8090.0A0A368R809_SETIT; Uncharacterized protein
TrEMBLK3XGE80.0K3XGE8_SETIT; Uncharacterized protein
STRINGSi000968m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-127floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]