PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G271800.1.p

Common Name

LOC101759368, SETIT_004887mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

LBD

Protein Properties

Length: 92aa MW: 9962.81 Da PI: 9.1868

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G271800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	74.9	1.5e-23	4	90	1	79
DUF260 1 aCaaCkvlrrkCakd..Cvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgv 79 +C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a+p ++ r+ +++sl+yeA+ r+ +PvyG+v++ Seita.5G271800.1.p 4 SCNGCRVLRKGCSDTctCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAAPADHlRPVVFRSLLYEACGRIVNPVYGSVSL 90 6**********9855789********************************88877*********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.555	3	91	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-19	4	90	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDTCT CTIRPCLQWI KTPEAQANAT VFLAKFYGRA GLLNLLAAAP 60 ADHLRPVVFR SLLYEACGRI VNPVYGSVSL L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G271800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU954764	1e-107	EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBank	KJ728404	1e-107	KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972094.1	6e-62	LOB domain-containing protein 40
Swissprot	Q9M886	4e-48	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	K3XSI8	1e-60	K3XSI8_SETIT; Uncharacterized protein
STRING	Si004887m	2e-61	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-40	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Seita.5G271800.1.p
Entrez Gene	101759368