PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G273000.1.p

Common Name

SETIT_004194mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

ZF-HD

Protein Properties

Length: 242aa MW: 26189.9 Da PI: 7.7308

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G273000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	85.9	4.3e-27	18	70	5	56
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRre 56 +Y eClkNhAasl gha+DG gEfmps+++ +++a+l+CaACgCHRnFH r Seita.5G273000.1.p 18 VYWECLKNHAASLDGHALDGYGEFMPSPEAGpADPASLQCAACGCHRNFHYRL 70 79************************9999****************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.3E-22	18	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.2E-25	19	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-18	19	69	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.22	19	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.9E-7	179	211	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MWPAARRRRR GGAGEAGVYW ECLKNHAASL DGHALDGYGE FMPSPEAGPA DPASLQCAAC 60 GCHRNFHYRL REAPPSPPLL TLPHPLPAQP APVPQHVMRE APEDRLPAAF EDDELDEGSD 120 FDEDCPLSPL PAPAMGPPRY LQPAPHMLLA LSTGAPSASI PTMVPRPPAS LGSMPALGAG 180 SAAARKRFRT KFIPEQKQRM QALSERLGCH LQMVCCPGGR EEGGLGEKWR WRRGDGWRRV 240 C*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G273000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972095.1	1e-150	zinc-finger homeodomain protein 10
Swissprot	Q6ER21	2e-34	ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBL	K3XQK8	1e-171	K3XQK8_SETIT; Uncharacterized protein
STRING	Si004194m	1e-172	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3646	33	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	4e-30	zinc finger homeodomain 1

Link Out ? help Back to Top
Phytozome	Seita.5G273000.1.p