PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G280700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family RAV
Protein Properties Length: 399aa    MW: 41183.4 Da    PI: 9.7529
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G280700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-1179127155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ykGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  Seita.5G280700.1.p  79 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGETDAARAYDVAAQRFRG 127
                         78****9888.8*********......44**********99*************98 PP
2B3993e-31214305185
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F++
  Seita.5G280700.1.p 214 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYR 304
                         89*******************************5556799*************************************************95 PP

                         - CS
                  B3  85 d 85 
                         +
  Seita.5G280700.1.p 305 S 305
                         4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.88E-2279135No hitNo description
SuperFamilySSF541713.99E-1679135IPR016177DNA-binding domain
PfamPF008473.4E-779127IPR001471AP2/ERF domain
PROSITE profilePS5103219.61280135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1980135IPR001471AP2/ERF domain
SMARTSM003802.3E-2580141IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.9E-39206320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-31212305IPR015300DNA-binding pseudobarrel domain
CDDcd100175.17E-30212317No hitNo description
PROSITE profilePS5086313.958214323IPR003340B3 DNA binding domain
PfamPF023625.7E-28214305IPR003340B3 DNA binding domain
SMARTSM010191.4E-23214322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDSASSLVDD TSSGGGASTD KLRALAAAAA SAGAPLERMG SGASAVVDAA EPGAEADSAA  60
AAAAGAGAGV GVGGKLPSSR YKGVVPQPNG RWGAQIYERH QRVWLGTFAG ETDAARAYDV  120
AAQRFRGRDA VTNFRPLADA DPDAAAELRF LVSRSKAEVV DMLRKHTYFD ELAQNKRAFA  180
AAASAPTTSA LANAHSSPSP SPAAAAAAAR EHLFDKTVTP SDVGKLNRLV IPKQHAEKHF  240
PLQLPSAGGE SKGVLLNFED AGGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLQAGDVV  300
GFYRSAAAAG ADSKLFIACR LRPNGDVAAL TSPVVEVEPS SAPVAKAVRL FGVDLLSAPA  360
QAPAAAPAEA MAGCKRARDL AALPQAAFKK QLVELALV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-522083232114B3 domain-containing transcription factor NGA1
5os9_B5e-522083232114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G280700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9695190.0EU969519.1 Zea mays clone 331400 DNA-binding protein RAV1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969625.10.0AP2/ERF and B3 domain-containing protein Os01g0693400
SwissprotQ8RZX90.0Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A368RBB80.0A0A368RBB8_SETIT; Uncharacterized protein
STRINGSi004045m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-99related to ABI3/VP1 1