PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G282600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 135aa    MW: 14535.5 Da    PI: 8.2791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G282600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.83.6e-1026671155
                 AP2 11 krgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        + g+W+AeIrdp     +     +lg+f tae+A  a++  + +++g
  Seita.5G282600.1.p 26 REGKWAAEIRDP-----HhvVCKWLGTFNTAEDATHAYDIVAVEFWG 67
                        579********7.....559*******************99998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.713775IPR001471AP2/ERF domain
SMARTSM003802.6E-132681IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-142676IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.9E-182775IPR001471AP2/ERF domain
CDDcd000188.62E-152874No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEGSSPRLRA VPPSRGRGQA AAVVEREGKW AAEIRDPHHV VCKWLGTFNT AEDATHAYDI  60
VAVEFWGRRT KLNFHYNAAP APAPTSMYHL LQPLLESLHE TCGLNASSAV HVALATVAPA  120
GQHGARPVPK EQNI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G282600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954022.11e-43ethylene-responsive transcription factor ERF112
TrEMBLA0A368RBD82e-94A0A368RBD8_SETIT; Uncharacterized protein
STRINGSi018144m6e-43(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-16ERF family protein