PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G315100.1.p
Common NameLOC101761904, SETIT_001735mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 400aa    MW: 40964.8 Da    PI: 5.9584
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G315100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.7e-18276310135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Seita.5G315100.1.p 276 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 310
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.571270306IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.4E-15270307IPR013088Zinc finger, NHR/GATA-type
SMARTSM004013.6E-18270320IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-15272333No hitNo description
CDDcd002021.74E-14275322No hitNo description
PROSITE patternPS003440276301IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15276310IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEAAAAAEYG YYGGGGAGPR ERKGAAGCGD HFVVDDLLVL PYDDDEEGDG EAAAAGDGGA  60
PPCLQAAGAG GGVKEEGGLG NFSADSSTVT ALDSCSNSFS GLADGDFPGE FCEPYDQLAE  120
LEWLSNYMGE GDDAFATEDL QKLKLISGGY SPAVNVPPAP LAPAAAASAV SAAQPGMFIP  180
EAPVPAKARS KRSRAAPGNW SSRLLVLPPP PASPPSPASM AISPAESGVS AQAFPAKKPS  240
KPSKKKDAPP APQALPSSAS AVQSAGSAAS AEGRRCLHCE TDKTPQWRTG PMGPKTLCNA  300
CGVRYKSGRL VPEYRPAASP TFVMSKHSNS HRKVLELRRQ KEVQHQPPHQ AHVIAGGGPG  360
GLMHMQSSLL FDGPAAAPIV AGDDFLIHHH LGADYRQLI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G315100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969927.10.0GATA transcription factor 12
TrEMBLK3XIL30.0K3XIL3_SETIT; GATA transcription factor
STRINGSi001735m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-51GATA transcription factor 12