PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G348100.1.p
Common NameLOC101785948, SETIT_003053mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 185aa    MW: 19442.8 Da    PI: 8.7326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G348100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-193181256
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+ eAa a+++a++ l+g+
  Seita.5G348100.1.p 31 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 81
                        6********.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.04E-223189IPR016177DNA-binding domain
PROSITE profilePS5103221.9443188IPR001471AP2/ERF domain
SMARTSM003804.5E-343194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-313190IPR001471AP2/ERF domain
CDDcd000181.97E-293190No hitNo description
PfamPF008471.1E-123180IPR001471AP2/ERF domain
PRINTSPR003674.5E-103243IPR001471AP2/ERF domain
PRINTSPR003674.5E-105470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDMDPTLGAV LSHGGAGGGA VGGGDGGGDA HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT  60
FDTPVEAALA YDRAARTLRG AKAKTNFPDH AGGGGRHRHQ QQHLHLARPF SRQPLPQAVP  120
FGGVDLDCPS PWHFVYLQPE AADTALPLAA TQPAAAPPPS TALELSTGQT RGGLPFDLNE  180
APSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-213194569ATERF1
3gcc_A2e-213194569ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G348100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-83HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970252.11e-131ethylene-responsive transcription factor 12
TrEMBLK3XMD01e-130K3XMD0_SETIT; Uncharacterized protein
STRINGSi003053m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-32ERF domain protein 12