PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G378000.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 345aa    MW: 36164.1 Da    PI: 5.8681
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G378000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.4e-31153209258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         +Dgy+WrKYGqK++k++++prsYY+Cts++C +kk+ve+s++dp+++++tYeg H h
  Seita.5G378000.2.p 153 SDGYKWRKYGQKSIKNNPHPRSYYKCTSSRCGAKKHVEKSTDDPEMLIVTYEGPHLH 209
                         7******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-30149210IPR003657WRKY domain
SuperFamilySSF1182902.62E-26150211IPR003657WRKY domain
SMARTSM007741.0E-35152211IPR003657WRKY domain
PROSITE profilePS5081127.829153212IPR003657WRKY domain
PfamPF031064.4E-26154209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGDVLHPQAG PGDVAPLWPG EIDEQLITEL LSDESLLLGA LQQAPAGGDA EPCSRDNTGA  60
SSSPAAPAPC NSGGGGAERE EVLPQPEAVS RALCSVYTGP TIRDIEKALS TSRPYPWSSR  120
RYSTMHLFGA ASRAAPESKY TTKVRSCGGK TPSDGYKWRK YGQKSIKNNP HPRSYYKCTS  180
SRCGAKKHVE KSTDDPEMLI VTYEGPHLHG PQPLFPRRQL ASVDLSGAAA AAAKKQARTP  240
SPAARASDDG GAWPPNDQQM ACDDDDAGAR GGRAATLPGS GRAEDAVPHG QQHLADSCDD  300
GSTASVPAPP PRAATALTCD SPPTTWSCPD FPFVWSPEAD PLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-211542091974Probable WRKY transcription factor 4
2lex_A6e-211542091974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G378000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970546.10.0uncharacterized protein LOC101763814 isoform X2
TrEMBLA0A368RDE50.0A0A368RDE5_SETIT; Uncharacterized protein
STRINGSb03g039550.11e-134(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.15e-28WRKY DNA-binding protein 49