PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G389500.4.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 435aa    MW: 47416.5 Da    PI: 6.5102
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G389500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.71.6e-10127154633
                         HHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   6 rerrkqkNReAArrsRqRKkaeieeLee 33 
                          err+++NReAAr+sR+RKka++++Le+
  Seita.5G389500.4.p 127 TERRLAQNREAARKSRLRKKAYVQQLET 154
                         59************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.3E-6122198IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-7128155No hitNo description
PROSITE profilePS502178.519128168IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.39E-7128169No hitNo description
PfamPF001701.7E-7128155IPR004827Basic-leucine zipper domain
PROSITE patternPS000360129144IPR004827Basic-leucine zipper domain
PfamPF141442.8E-28207280IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MVHGEESSWR MERAALPLNQ ALAYGVQAHA AAAAAPPSCF LDFQPAAAAA AYFGFGELEE  60
ALIHGGGGAS ANAGGGVDPG VIIKSDAPAQ TKPAAAGYLA GAGGGRPPTL EIFPSWPMRH  120
QQQLHSTERR LAQNREAARK SRLRKKAYVQ QLETSRIRLQ QVEHELQRAR SQGLFVGGCS  180
AAGDMSSGAA AFDMEYARWL DDDGKRLAEL RGGLQAHLDG NLGLIVEECV QHYDELFQLK  240
AALAHEDVFH LLTGGWATPA ERCFFWMGGF RPSELLKILI PQLDPLTEQQ LLGICNLQQS  300
SEQAEEALAQ GLHQLHQSLA DTVAAGTLND GAAAPNYMSL MAVALEKLAS LESFYQQADN  360
LRQQTLHQMR RILTTRQAAR CFLSIGEYYR RLRALSNLWA SRPRENFIGT ESLSPTATEL  420
QVMHQQQQNQ FSGF*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269|PubMed:9490265}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G389500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0369490.0AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682636.10.0transcription factor LG2 isoform X4
SwissprotO490670.0LG2_MAIZE; Transcription factor LG2
TrEMBLA0A368RDG20.0A0A368RDG2_SETIT; Uncharacterized protein
STRINGSi000955m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-130bZIP family protein
Publications ? help Back to Top
  1. Walsh J,Freeling M
    The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
    Plant J., 1999. 19(4): p. 489-95
    [PMID:10504571]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]