PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G393800.1.p
Common NameSETIT_003247mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 148aa    MW: 16539.9 Da    PI: 10.6858
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G393800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.71.4e-1465109347
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                         + +r++r++kNRe+A rsR+RK+a+i+eLe  v +Le+eN +L  
  Seita.5G393800.1.p  65 AMQRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEENAELLR 109
                         689*************************************98753 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-863125IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.41565107IPR004827Basic-leucine zipper domain
PfamPF001701.0E-1365119IPR004827Basic-leucine zipper domain
CDDcd147077.42E-1667117No hitNo description
SuperFamilySSF579595.63E-1168112No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-1468123No hitNo description
PROSITE patternPS0003607085IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MTLEDFLARE GAVKEDEARI SGPSAPAEGQ VVMGFLGGAE GVGVAGGGGG RGRKRQLMDP  60
VDRAAMQRQK RMIKNRESAA RSRERKQAYI AELESLVTQL EEENAELLRG QEERHQKRLK  120
ELLERVTPVI VRKKLSRDLR RTNSMQW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G393800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0541491e-136BT054149.1 Zea mays full-length cDNA clone ZM_BFb0134E03 mRNA, complete cds.
GenBankBT0559441e-136BT055944.1 Zea mays full-length cDNA clone ZM_BFc0058E14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702071.21e-99LOW QUALITY PROTEIN: G-box-binding factor 4-like
SwissprotQ0JHF11e-74BZP12_ORYSJ; bZIP transcription factor 12
TrEMBLK3XMX44e-99K3XMX4_SETIT; Uncharacterized protein
STRINGSi003247m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26653786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.12e-28G-box binding factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]