PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G417300.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 701aa MW: 80793.4 Da PI: 6.4734

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G417300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	210	232	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C + F + n++rH+ H Seita.5G417300.1.p 210 YKCSKCLEEFCTEINYERHLEAH 232 9******************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04424	1.1E-6	33	131	IPR007518	Protein of unknown function DUF544
PROSITE profile	PS50157	9.078	210	237	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	212	232	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MRYTAREMEF MGGSTKVLVC NDRAASALTS LSNWLVLNNE ANFDSREPKF TVAQFMERLI 60 SGKILNWHKN NVLPTHENQR IVVEYFDITK RLCTGIKVNP VAGTAKFEDS REYDLFRILG 120 VPLLHAPAFN EQVFPSLQEQ LEPGQIGILY LNGEFNTICK HNGTVYMLVE DEALHKKNPS 180 ASWKTMVDEK EIFVAGDFSY TRAHINQKVY KCSKCLEEFC TEINYERHLE AHVPTSKAAL 240 NRSWNKDAFA KYWDQISDED AYSILSDGDQ TVEKSHGLPV DPIFKKWILG PEFLVTPPEV 300 RDALKQLKQL KHFMERKREK PSSDVLLGIL KVGSEGTFFS TNLPEGGFSF VEAGKSQNTT 360 RTMLTYFSLR VEEVLAKKWY TEKTVQANVV MKELLAECTD PSEEYFPNFV SRKRLVRLFT 420 LFNKDIVTAL TRTGRKIAKR LLNYILKAHK AGHCWDGEWN ILDIRVRGDG ATLIIDKMPV 480 NATKDGIVAD LQKFIVLLRP YYKIEGIKGP AYFDEFHSDV MSLPELESEK FEIFQKFLAD 540 HMAFLPPAST SNLLERLFKL CDDIRRQNAD FDYRPLQRLD CIGWTKIRDT MPYSKVFHYD 600 QSLSHPYNDN YWDLLRFVRN FINRGLKYTQ IDGVQSIEDP VILDIMVAYD LGKFITKLVL 660 HVLYVFEKPK RLVSTWNAYK TSDDATEEID EDGTEENEGI *

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MRYTAREMEF MGGSTKVLVC NDRAASALTS LSNWLVLNNE ANFDSREPKF TVAQFMERLI  60
SGKILNWHKN NVLPTHENQR IVVEYFDITK RLCTGIKVNP VAGTAKFEDS REYDLFRILG  120
VPLLHAPAFN EQVFPSLQEQ LEPGQIGILY LNGEFNTICK HNGTVYMLVE DEALHKKNPS  180
ASWKTMVDEK EIFVAGDFSY TRAHINQKVY KCSKCLEEFC TEINYERHLE AHVPTSKAAL  240
NRSWNKDAFA KYWDQISDED AYSILSDGDQ TVEKSHGLPV DPIFKKWILG PEFLVTPPEV  300
RDALKQLKQL KHFMERKREK PSSDVLLGIL KVGSEGTFFS TNLPEGGFSF VEAGKSQNTT  360
RTMLTYFSLR VEEVLAKKWY TEKTVQANVV MKELLAECTD PSEEYFPNFV SRKRLVRLFT  420
LFNKDIVTAL TRTGRKIAKR LLNYILKAHK AGHCWDGEWN ILDIRVRGDG ATLIIDKMPV  480
NATKDGIVAD LQKFIVLLRP YYKIEGIKGP AYFDEFHSDV MSLPELESEK FEIFQKFLAD  540
HMAFLPPAST SNLLERLFKL CDDIRRQNAD FDYRPLQRLD CIGWTKIRDT MPYSKVFHYD  600
QSLSHPYNDN YWDLLRFVRN FINRGLKYTQ IDGVQSIEDP VILDIMVAYD LGKFITKLVL  660
HVLYVFEKPK RLVSTWNAYK TSDDATEEID EDGTEENEGI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G417300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970945.1	0.0	uncharacterized protein LOC101782720
Refseq	XP_022682771.1	0.0	uncharacterized protein LOC101782720
TrEMBL	A0A368REP8	0.0	A0A368REP8_SETIT; Uncharacterized protein
STRING	Si000766m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.2	4e-12	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Seita.5G417300.1.p