PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G422100.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 308aa MW: 33525.7 Da PI: 4.7658

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G422100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.2e-05	280	303	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ C+k+F ++ L +H ++ H Seita.5G422100.1.p 280 YSCKSCSKTFYSSVALDTHRKVkH 303 99******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	12.009	280	307	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	282	303	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDFASCKHWG VLVRPGETVK CNPGEVYCHV SQIALQDDKG NEDVRVFVKV GGNEILVGTL 60 SVDKYPQCMI GLVFEKEFEL RHTSKNSNIS ALGYKFCETK SYSDTSTDDD DDSDEEVPLA 120 IPLYPNADDD RSKQTKSGVD NPASTQLCKP KNTLEETKDP EKQKGDVGGT DDDHSDENSV 180 HSEEGESGDD EDSSDEDDSD SSDEDDGEDT PKNIMGKNRP AETPLKTPLK KAKIATPSMG 240 NKTGSGSTKR SGYVHVATPY PKQVKKTPSI IDSSKQSAGY SCKSCSKTFY SSVALDTHRK 300 VKHNAHK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G422100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682481.1	0.0	uncharacterized protein LOC101777617
TrEMBL	A0A368RGK1	0.0	A0A368RGK1_SETIT; Uncharacterized protein
STRING	Si002175m	1e-177	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11173	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	7e-18	histone deacetylase 2C

Link Out ? help Back to Top
Phytozome	Seita.5G422100.1.p