PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G432700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 280aa    MW: 29463.7 Da    PI: 11.2156
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G432700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.83.9e-251160251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        rie+k  rqv fskRr g++KKA+EL  LCdaeva+++fs+ gklyeyss
  Seita.5G432700.1.p 11 RIEDKASRQVRFSKRRSGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 60
                        8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.987262IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-32261IPR002100Transcription factor, MADS-box
CDDcd002655.37E-34363No hitNo description
SuperFamilySSF554551.44E-25463IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-27424IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241158IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-272439IPR002100Transcription factor, MADS-box
PRINTSPR004049.7E-273960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MARRGRVELR RIEDKASRQV RFSKRRSGLF KKAFELALLC DAEVALLVFS PAGKLYEYSS  60
TSTAGGQARG DSLRLLPLRH VGSPPVEGGE VGAARRDGGR GLGRSRAACR RRGTGLVAEE  120
GKGDARPAAF ASSRSGAAAE GGETGRPAGG GRGGRGGSPG GRRVPLDDGW REGAVVRGRR  180
SGGGKTNSRE YRVVWVGIEG EGSQDAAASD LQTRLKEIAT WSEQNNANES DANELEKLEK  240
LLTNALRDTT TKKMLTKQNN GGAGGSTSSQ NSSGPRRQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-17461360MEF2C
5f28_B8e-17461360MEF2C
5f28_C8e-17461360MEF2C
5f28_D8e-17461360MEF2C
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G432700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0383494e-73BT038349.1 Zea mays full-length cDNA clone ZM_BFb0228B20 mRNA, complete cds.
GenBankEU9616774e-73EU961677.1 Zea mays clone 237541 MADS-box transcription factor 8 mRNA, complete cds.
GenBankKJ7269344e-73KJ726934.1 Zea mays clone pUT3480 MADS transcription factor (MADS69) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368RFF60.0A0A368RFF6_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.13e-25AGAMOUS-like 14