PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G449900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 224aa    MW: 24905 Da    PI: 8.6283
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G449900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.95.9e-17291557128
                 NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevls 94 
                         F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++   +++ +fF+ r ++ +     +r ++ +g W   +t   ++v++
  Seita.5G449900.1.p  29 FDPTEDELVLHFLRPQLRGFPPRVAGAVLEADPCGAAPWELLARYG-LREQGHFFAARGRRRPF---VRRaVAGAGAWMhsSTRAGRSVTD 115
                         9***********************999**************85553.35677*******99874...55646789***8446677899999 PP

                 NAM  95 kkgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                          +  + + +  + fy       + a + ++t Wvm+ey++
  Seita.5G449900.1.p 116 LGVVVRWSRVKFCFYtrggpgGAGAGQQRSTGWVMDEYEI 155
                         88999999*******766654234555579********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.37723182IPR003441NAC domain
SuperFamilySSF1019412.48E-2728182IPR003441NAC domain
PfamPF023652.4E-1129155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEHEEVNLSA EAEEAEDQQA AGDIVVDGFD PTEDELVLHF LRPQLRGFPP RVAGAVLEAD  60
PCGAAPWELL ARYGLREQGH FFAARGRRRP FVRRAVAGAG AWMHSSTRAG RSVTDLGVVV  120
RWSRVKFCFY TRGGPGGAGA GQQRSTGWVM DEYEITDPGC YRRRDEEGEE DEYWVVCRVR  180
KSKRPVPEAA KPASPPARQR WRKLAKLETD SGVKAKVSRP LRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G449900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682104.11e-161NAC domain-containing protein 2
TrEMBLA0A368RFW91e-160A0A368RFW9_SETIT; Uncharacterized protein
STRINGSi004307m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528