PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G000400.1.p
Common NameLOC101765717, SETIT_013246mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 862aa    MW: 98322 Da    PI: 6.5148
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G000400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.32.9e-14102185190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         k+Y++YA++ GF   + ks++  ++g + +  + Cs+ g+ + +         +r++t+++C a++ +k+++d   ++++ +leHnH+l+
  Seita.6G000400.1.p 102 KYYKQYAEDSGFAAIILKSSYL-KSGVCRRLVLGCSRAGRGRANACY-----LSRESTKINCPARISLKLRQDRWLHIDDAKLEHNHPLN 185
                         69***********999999988.7888***************99998.....999****************99999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-11102185IPR004330FAR1 DNA binding domain
PfamPF105511.0E-24288381IPR018289MULE transposase domain
PROSITE profilePS509669.062575612IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-5582608IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MSDVEAASLL EELAREATID DVAVLVNGNG EEQHGNEAVL KSAEALQNLG GISAKEVPQH  60
EGKEVILVDD NDSGQEDGGK AKVDENAPRF GLRFKTYDDA LKYYKQYAED SGFAAIILKS  120
SYLKSGVCRR LVLGCSRAGR GRANACYLSR ESTKINCPAR ISLKLRQDRW LHIDDAKLEH  180
NHPLNQSSVA LTNCYKKLTD AKNGEPASRL KGRRNVPAEK EQGNFTEIGR LKFGEGDDEY  240
IQKFFGNMQN KNPYFFYLVD LDYQGRLRNL FWSDARSRAA NDYFGHDVVY FDTSYLTEKY  300
DLPLVFFTGM NNHGQPVLFG TGLLSDLNAD SYAWLFRAFL ACMKGRCPMA IITEHYNAIL  360
DAVREVLPEV RHRLCLYRIM KDVAENLKEH AEFKTIKKAL NKVTYGSLKI PEFEADWKKI  420
IDEHGLGENE CLSSLYEHRQ LWAPAYLRDK FWAGMSISQH GESISSYYDG FVYPKTSLKQ  480
FFSKYEMILE NKYKKEWQAD EESSHRTPLT VTKFYMEEQL AKAYTINMFR KFQDELKATM  540
YCDGMPIKVD GRLVTFEVKE CSYMEDGKDT ESRTYEVYFC KEGKVEIECE CGFVQFTGVL  600
CRHALSVLKL QEIFEIPSDY VLDRWRRDYK KLYSKANKPN EMPLSGIVER SDYLFSQCSQ  660
LLNLGFVSES RYLVALKLLR DAERSLLDDG LPARDRQSTL LSFEADAPEN GQGLFNPQFS  720
ESVKNSQSAH AKRRGRPPKK VTESNGETVT QPNKEQDFLR SSFVTDDTNM VQGPPSASHL  780
EGPHMGVQGG IDLMEGIPNL SFGNHFGMDI NHQHQVPSHQ RMQQNNFMQV QPEPHGFASQ  840
WVYHPMLQDN PVLRTPTRRT G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G000400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972373.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLK3YG780.0K3YG78_SETIT; Uncharacterized protein
STRINGSi013246m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-116FAR1-related sequence 6