PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G027500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YC
Protein Properties Length: 312aa    MW: 33450.9 Da    PI: 4.8646
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G027500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC152.86.2e-481522541100
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql++fw+ q    e+atd+k h+lPlarikki+kadedvkmi+aeaPv+++kace+fileltlrswlh+e +krrt+++sd++aa+   ++
  Seita.6G027500.1.p 152 QLQAFWAGQlaeAEQATDLKVHSLPLARIKKIMKADEDVKMIAAEAPVVFAKACEMFILELTLRSWLHTEGTKRRTMQRSDVSAAIMANEM 242
                         89*****9988789***************************************************************************** PP

               NF-YC  89 fdflvdivprde 100
                         fdfl+d+ p+++
  Seita.6G027500.1.p 243 FDFLMDVTPTEQ 254
                         ********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.68E-27160246IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.2E-33167237IPR009072Histone-fold
PfamPF008089.3E-19174237IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDQHSQINKV VGGATNVDTP AASYALTPFL QHVPMESVPP SSVGAAFLPF SASQGSVAYP  60
SAILPLLSNQ QPSQTDPFEA ATNDAAYALT ALTTYNHQPE ALASVPPSSS AGATFLPAPA  120
SQGAPTAYQT AIPPPLSNQH QAALLQKLQQ QQLQAFWAGQ LAEAEQATDL KVHSLPLARI  180
KKIMKADEDV KMIAAEAPVV FAKACEMFIL ELTLRSWLHT EGTKRRTMQR SDVSAAIMAN  240
EMFDFLMDVT PTEQQTNGDG VLPPPPPLQT TAGQVPFPMH VPFPMYANHQ PPFMWPTPEY  300
QQQQNPGGGN E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-43160251394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224230RRTMQRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G027500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614941e-33AK361494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1141P02.
GenBankAK3722951e-33AK372295.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2149D08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683306.10.0nuclear transcription factor Y subunit C-6-like
TrEMBLA0A368RHD90.0A0A368RHD9_SETIT; Uncharacterized protein
STRINGSi015775m1e-139(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157031216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.26e-45nuclear factor Y, subunit C2