PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G034500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YC
Protein Properties Length: 114aa    MW: 13363.7 Da    PI: 4.1959
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G034500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC47.93e-1520615596
               NF-YC 55 ileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96
                        + eltlr+wlhaee krrtl+k d++aa++ t++fdfl +  
  Seita.6G034500.1.p 20 LQELTLRAWLHAEEDKRRTLQKKDVTAALAGTEVFDFLGEAT 61
                        569***********************************8865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.64E-92057IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.7E-102059IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MLISLQHWQL QPHQQAPPLL QELTLRAWLH AEEDKRRTLQ KKDVTAALAG TEVFDFLGEA  60
TATVQEDDDP YRDYYWDDYS PPWSPDESPS PDLRNVTCDD PRYYTYIHDY YSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541RRTLQKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G034500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321034.16e-27nuclear transcription factor Y subunit C-3
TrEMBLA0A368RHN15e-77A0A368RHN1_SETIT; Uncharacterized protein
STRINGPavir.Fa02054.1.p3e-48(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1972668
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-12nuclear factor Y, subunit C2