PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G044300.2.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 413aa MW: 44948 Da PI: 7.2979

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G044300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.4	4.9e-11	127	166	3	39
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLe 39 ++k +rr+++NReAAr+sR+RKka+i++Le+ k ++Le Seita.6G044300.2.p 127 RDKTQRRLAQNREAARKSRLRKKAYIQNLETsrlKLAQLE 166 79****************************8333444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.3E-8	124	169	No hit	No description
SMART	SM00338	0.0041	125	178	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.8E-8	127	167	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.036	127	169	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.34E-7	129	168	No hit	No description
PROSITE pattern	PS00036	0	132	147	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.1E-27	212	286	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MELYHGYLED HFNIHKLSRL QPLATTSGAP AGWYGAPAAA ASGGAMGIYE RQRHMVAAGL 60 WGEPFRPDGD AFVAPLAAAA PVTGVAVDVV VETEAKFALQ AQDEAVPPVE EVAPSSDSFG 120 HDDARPRDKT QRRLAQNREA ARKSRLRKKA YIQNLETSRL KLAQLEQELT MARRQQGHGA 180 AGAGFLAPPV DPRVTAFELE YARWAEEQKR QAAELRAVLQ SGAPELQLRL LVDAAVAHYD 240 ALFDARSRAA RADAVFVLSG VWRAPAERFF LWIGGFRPSE LLQVLAPRLD PLAERQASAV 300 RALQNTARQL EDALSQGMSK LQQTLVDALL TVDAPDDGGG YAARQMASAV GKLDDLVSFV 360 DQADHLRQQT LRNMNKILTL PQAARGLLAL ADYCQQLRAL SSLWAARPRE PA*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MELYHGYLED HFNIHKLSRL QPLATTSGAP AGWYGAPAAA ASGGAMGIYE RQRHMVAAGL  60
WGEPFRPDGD AFVAPLAAAA PVTGVAVDVV VETEAKFALQ AQDEAVPPVE EVAPSSDSFG  120
HDDARPRDKT QRRLAQNREA ARKSRLRKKA YIQNLETSRL KLAQLEQELT MARRQQGHGA  180
AGAGFLAPPV DPRVTAFELE YARWAEEQKR QAAELRAVLQ SGAPELQLRL LVDAAVAHYD  240
ALFDARSRAA RADAVFVLSG VWRAPAERFF LWIGGFRPSE LLQVLAPRLD PLAERQASAV  300
RALQNTARQL EDALSQGMSK LQQTLVDALL TVDAPDDGGG YAARQMASAV GKLDDLVSFV  360
DQADHLRQQT LRNMNKILTL PQAARGLLAL ADYCQQLRAL SSLWAARPRE PA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G044300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012702136.1	0.0	transcription factor HBP-1b(c38) isoform X1
Swissprot	A0A0P0WFC8	1e-118	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A368RI55	0.0	A0A368RI55_SETIT; Uncharacterized protein
STRING	Si013962m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	4e-97	bZIP family protein

Link Out ? help Back to Top
Phytozome	Seita.6G044300.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]