PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G044300.3.p
Common NameLOC101772870, SETIT_013962mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 368aa    MW: 40266.8 Da    PI: 7.7204
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G044300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.64.2e-1182121339
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLe 39 
                         ++k +rr+++NReAAr+sR+RKka+i++Le+   k ++Le
  Seita.6G044300.3.p  82 RDKTQRRLAQNREAARKSRLRKKAYIQNLETsrlKLAQLE 121
                         79****************************8333444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.4E-879124No hitNo description
SMARTSM003380.004180133IPR004827Basic-leucine zipper domain
PfamPF001704.9E-882122IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.03682124IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.62E-784123No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
PfamPF141445.0E-27167241IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGIYERQRHM VAAGLWGEPF RPDGDAFVAP LAAAAPVTGV AVDVVVETEA KFALQAQDEA  60
VPPVEEVAPS SDSFGHDDAR PRDKTQRRLA QNREAARKSR LRKKAYIQNL ETSRLKLAQL  120
EQELTMARRQ QGHGAAGAGF LAPPVDPRVT AFELEYARWA EEQKRQAAEL RAVLQSGAPE  180
LQLRLLVDAA VAHYDALFDA RSRAARADAV FVLSGVWRAP AERFFLWIGG FRPSELLQVL  240
APRLDPLAER QASAVRALQN TARQLEDALS QGMSKLQQTL VDALLTVDAP DDGGGYAARQ  300
MASAVGKLDD LVSFVDQADH LRQQTLRNMN KILTLPQAAR GLLALADYCQ QLRALSSLWA  360
ARPREPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G044300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972733.10.0transcription factor HBP-1b(c38) isoform X2
RefseqXP_012702136.10.0transcription factor HBP-1b(c38) isoform X1
TrEMBLA0A368RI550.0A0A368RI55_SETIT; Uncharacterized protein
TrEMBLK3YI930.0K3YI93_SETIT; Uncharacterized protein
STRINGSi013962m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-100bZIP family protein