PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G064600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 228aa    MW: 25373.6 Da    PI: 10.6041
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G064600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.35.3e-221011871997
                         -HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                  B3  19 pkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                          k++ae+h       +  + +++ l + d +g++W ++++y+++s++y+ltkGW++Fv+++gL++gD++vF+++   +e++l++  +
  Seita.6G064600.1.p 101 DKQHAEKHfplkrvsEAATGKGVLLNFADGEGKVWWFRYSYWNSSQSYILTKGWSRFVREKGLRAGDTIVFSHSTYgQEKQLFIDCR 187
                         68999999999988866777999*************************************************986656666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.0E-787189IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-20102187IPR015300DNA-binding pseudobarrel domain
CDDcd100174.63E-17102174No hitNo description
PfamPF023624.0E-19102187IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-26102192IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.716125190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MKGNKSIKEP DLQRSGSAPR HASRLRERES GTRSCSYGKP PPWLPAPTTS RDNSTMRSTR  60
VGVAPTAQIY ADELRQGLRH GWGMGTCAQP TPAWARAQLF DKQHAEKHFP LKRVSEAATG  120
KGVLLNFADG EGKVWWFRYS YWNSSQSYIL TKGWSRFVRE KGLRAGDTIV FSHSTYGQEK  180
QLFIDCRNTK TATTDVASML AAAPAEKPKE AQRGNFQIAE GNFPHKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-3310219733125DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G064600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968155.11e-69AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS01e-56Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A368RKE31e-169A0A368RKE3_SETIT; Uncharacterized protein
STRINGSi001909m5e-69(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5930622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-35related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]