PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G075700.1.p
Common NameSETIT_014280mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LSD
Protein Properties Length: 169aa    MW: 17842.4 Da    PI: 8.946
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G075700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD124.54.7e-081639124
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                        C+gC+ +L Y rGA+ V+C+ C+t
  Seita.6G075700.1.p 16 CSGCKRVLEYRRGATGVCCPGCNT 39
                        ***********************9 PP
2zf-LSD123.78.2e-085577123
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                        CggC t+L Y rGA ++RC+ C 
  Seita.6G075700.1.p 55 CGGCFTMLVYNRGAANIRCPHCG 77
                        **********************7 PP
3zf-LSD125.62.1e-0893117125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Crt+L+YP+GA+ V C+ C  V
  Seita.6G075700.1.p  93 CGHCRTTLAYPPGASTVGCPTCRCV 117
                         **********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.9E-81341IPR005735Zinc finger, LSD1-type
PfamPF069436.7E-61639IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.8E-95380IPR005735Zinc finger, LSD1-type
PfamPF069435.5E-95577IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.0E-790119IPR005735Zinc finger, LSD1-type
PfamPF069436.4E-893117IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MHRHLAAKCM QDQLICSGCK RVLEYRRGAT GVCCPGCNTF TAANPSGSEM SELVCGGCFT  60
MLVYNRGAAN IRCPHCGRVN STRSANQIGH LSCGHCRTTL AYPPGASTVG CPTCRCVNPV  120
RNNNSGGSAR PAQSDARPQT VLVENPKTLD EKGKLVSNVA VGVTSWKR*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G075700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972942.11e-113protein LOL4 isoform X2
SwissprotQ84UR06e-78LOL4_ORYSJ; Protein LOL4
TrEMBLA0A368RJH21e-120A0A368RJH2_SETIT; Uncharacterized protein
STRINGSi014280m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.73e-39LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]