PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G091700.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 228aa MW: 25861.5 Da PI: 9.4141

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G091700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32.4	3e-10	86	172	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnH 87 fY +YA+ + F v++ ++kk +r ++Cs+egk + k ++ + r++++ +t+Cka+lk ++ + + +++k +l HnH Seita.6G091700.1.p 86 FYMRYAQLAEFGVKMCNKKKF-------SRVMRCSCEGKGDFYKGDEALQVRNKTTVKTKCKAHLKFTRVYdsegnEVDMVIEKANLFHNH 169 9***********9987776.......8899*****99999999**************998764332334678889999* PP FAR1 88 ela 90 l Seita.6G091700.1.p 170 LLH 172 885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-6	86	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MLESSSAGFR TPPTQTARRD GSNEDQTITT RRQGVVFSPL ATLNANQMIA REEEIPPQTH 60 QNESMDPNMI PREGMSFHTE AETKAFYMRY AQLAEFGVKM CNKKKFSRVM RCSCEGKGDF 120 YKGDEALQVR NKTTVKTKCK AHLKFTRVYD SEGNEVDMVI EKANLFHNHL LHTPLKTKQM 180 RSHKSTELVL YQIIDKLQEA SMSTQSIKNV LQNMHGGVEL VPITSRT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G091700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A368RJS2	1e-171	A0A368RJS2_SETIT; Uncharacterized protein
STRING	Si027404m	1e-125	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-07	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Seita.6G091700.1.p