PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G108000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 378aa    MW: 40183.8 Da    PI: 5.5741
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G108000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.9e-083183512154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L +++gL+ +q+ +WF N+R +
  Seita.6G108000.1.p 318 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 351
                         469*****************************87 PP
2ELK26.51.5e-09272293122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++L+++++E++
  Seita.6G108000.1.p 272 ELKHELKQGYKEKLIDIREEIL 293
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.5E-19106150IPR005540KNOX1
PfamPF037908.4E-17108149IPR005540KNOX1
SMARTSM012565.1E-27159215IPR005541KNOX2
PfamPF037911.4E-18167214IPR005541KNOX2
PROSITE profilePS5121310.039272292IPR005539ELK domain
SMARTSM011880.004272293IPR005539ELK domain
PROSITE profilePS5007111.742292355IPR001356Homeobox domain
SMARTSM003895.1E-11294359IPR001356Homeobox domain
SuperFamilySSF466894.11E-16294358IPR009057Homeodomain-like
CDDcd000863.62E-12295356No hitNo description
Gene3DG3DSA:1.10.10.604.1E-25299356IPR009057Homeodomain-like
PfamPF059201.0E-17312351IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAFHGHLPHE MSMPQLGADD AAAAAAAAAA GAGGGGPPAW MRYGDGSFLH LQTTSDSSAS  60
PSAAAAAAAA AGLQWNMGGA GKDAVAAMGA GVVAAGGAEE PEADAARCKA EVLAHPLYEQ  120
LLSAHVACLR IATPVDQLPR IDAQLAQSQG VVVKYSGLAT AAAGDDGREL DQFMTHYVLL  180
LCSFKEQLQQ HVRVHAMEAV MACWELEQNL QSLTGASPGE GTGATMSDGE DDQADSEGNI  240
YDPGLDSPDT MGFGPLVPTE SERSLMERVR QELKHELKQG YKEKLIDIRE EILRKRRAGK  300
LPGDTTSTLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSSS  360
STNAKSKRKS NAGDGNS*
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G108000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973169.10.0homeobox protein knotted-1-like 13 isoform X1
SwissprotQ0J6N40.0KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A368RKC70.0A0A368RKC7_SETIT; Uncharacterized protein
STRINGOPUNC08G08730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-152KNOTTED1-like homeobox gene 3