PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G118200.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 139aa MW: 16928.2 Da PI: 8.9343

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G118200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.8	3.6e-18	31	114	1	82
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 +fYn+YA++ GF+++k++ ++++ ++e+++r+f+Cs+eg+r+ + + +++r+++a tr+gC+a+ ++ ++ +g w+v++++ Seita.6G118200.1.p 31 EFYNDYAYHKGFNISKDRVRYKTGTKEVIWRRFMCSCEGYRSVKYFErMDQKRQPHALTRCGCTARHDMEWSEsNGIWYVKHFV 114 6***************************************998775789999********99999888****9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-16	31	114	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MEEEGYISLE KIKEYKSVVD QTFMREKDFY EFYNDYAYHK GFNISKDRVR YKTGTKEVIW 60 RRFMCSCEGY RSVKYFERMD QKRQPHALTR CGCTARHDME WSESNGIWYV KHFVDTTRFL 120 FYCNGKKTLQ YAQNRCNI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G118200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012700767.1	2e-66	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_022680951.1	6e-65	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_022685196.1	3e-64	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A368RKI8	1e-99	A0A368RKI8_SETIT; Uncharacterized protein
STRING	Si028177m	3e-62	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-08	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Seita.6G118200.1.p