PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G123200.1.p

Common Name

LOC101766549, SETIT_014523mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 176aa MW: 19443.7 Da PI: 8.719

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G123200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.7	6.8e-15	38	98	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 elkr rr+++NRe+A+rsRqRK++ ++ L v++L + ++L l++ ++++a+ ++++ Seita.6G123200.1.p 38 ELKRKRRMESNRESAKRSRQRKQQHLDDLNSQVDQLRTTKQQLLTALNNTTQNYAAAEAQN 98 79***************************************************99888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.9E-14	36	100	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.0E-12	38	94	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.484	38	101	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.02E-11	39	92	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.4E-11	40	113	No hit	No description
CDD	cd14702	5.90E-16	41	92	No hit	No description
PROSITE pattern	PS00036	0	43	58	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MTLLGGTFSS GSGTSSGSSH GTRSFGSEGD MELQARMELK RKRRMESNRE SAKRSRQRKQ 60 QHLDDLNSQV DQLRTTKQQL LTALNNTTQN YAAAEAQNSV LRTQMIELES RLSALRDIIC 120 YMNANLQVSN SATINANPST IMGVTANYDA FDASAWNSGM PMVQQPIDHL LYQCF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	57	KRSRQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G123200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973271.1	1e-128	bZIP transcription factor 11 isoform X1
TrEMBL	K3YJV4	1e-127	K3YJV4_SETIT; Uncharacterized protein
STRING	Si014523m	1e-128	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3740	32	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	3e-24	basic leucine-zipper 44

Link Out ? help Back to Top
Phytozome	Seita.6G123200.1.p
Entrez Gene	101766549