PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G157000.1.p
Common NameLOC101765318, SETIT_015230mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 245aa    MW: 25902 Da    PI: 7.1297
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G157000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.41.3e-3479152375
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.ea 75 
                          ++drhski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl+q+kpai+ l + + ++a  +  +
  Seita.6G157000.1.p  79 FRTDRHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLTQSKPAIDRLHDADEPAAAPSsGP 152
                         689************************************************************66666333211 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-3380150IPR005333Transcription factor, TCP
PROSITE profilePS5136933.98580138IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MPATAMSAWD GYGGQIFPAD VLLHHQETLE AVLQQPAVAV VAPLREPDQA AGDAGATAAV  60
VDAGGGVHGA AAAPRRRPFR TDRHSKIRTA QGVRDRRMRL SVGVAREFFA LQDRLGFDKA  120
SKTVNWLLTQ SKPAIDRLHD ADEPAAAPSS GPAVVKGRGE GSSSSTCCFN KDPRGEKGSR  180
SRGGRDGPSA ALMEEHGGGE IGWIASDTAV AAAPPQPINE LEYSYQYYLQ LEEMMRCNNG  240
GVPR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1485138154Putative transcription factor PCF6
5zkt_B3e-1485138154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G157000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634579e-86BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds.
GenBankEU9756369e-86EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds.
GenBankKJ7268969e-86KJ726896.1 Zea mays clone pUT3439 TCP transcription factor (TCP15) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973503.21e-179transcription factor TB1
TrEMBLK3YLV41e-178K3YLV4_SETIT; Uncharacterized protein
STRINGSi015230m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-25TCP family protein