PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G164700.2.p
Common NameSETIT_013842mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 295aa    MW: 31802 Da    PI: 4.8179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G164700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.13e-152576155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  Seita.6G164700.2.p 25 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 76
                        89****99**********988422...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-102575IPR001471AP2/ERF domain
CDDcd000184.70E-232585No hitNo description
SuperFamilySSF541713.92E-172585IPR016177DNA-binding domain
PROSITE profilePS5103217.7412684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-172684IPR001471AP2/ERF domain
SMARTSM003801.1E-252690IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEGQPREEYI GSLRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVLGNK YLYLGTYATQ  60
EEAAVAYDIA AIEHRGLNAV TNFDIGHYVN HWHRHRRGAG GGDSLGAMDA ATPVVVPFQL  120
PDDLPERPAA TGLNGTMGAA DLHDGEDQMP HHACSFLGDG AQLADQVGPP AHHAAPTPSA  180
LDLLLQSPKF KEMMEQVSEA AAMADGNSSS SAAETSWASS SSSSPPQPLS PQRQPEISGG  240
STPARCSFPD DVQTFFDFEN ETDMGFTYAE VDTFLFGDLG EYAAPMFQYC ELDV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G164700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973570.10.0AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A368RM630.0A0A368RM63_SETIT; Uncharacterized protein
TrEMBLK3YHX30.0K3YHX3_SETIT; Uncharacterized protein
STRINGSi013842m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.23e-35AP2 family protein