PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G166200.1.p
Common NameSETIT_014772mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 80aa    MW: 9197.13 Da    PI: 12.1435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G166200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.000231641955
                        HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        ++ eL++++P       +K +  ++L+++ eYI+ L+
  Seita.6G166200.1.p 31 RLRELKKIVPVG---ARRKADVDAVLRQTAEYICALE 64
                        6889*******6...699***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-53174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-43171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MVTQGKSIKF SRRGMVSLRR RRPFQLMVLR RLRELKKIVP VGARRKADVD AVLRQTAEYI  60
CALELKVAIL RRLSDIYGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G166200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664631.15e-34uncharacterized protein LOC100277208
TrEMBLK3YKK33e-47K3YKK3_SETIT; Uncharacterized protein
STRINGSi014772m4e-48(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP568856