PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G178400.1.p

Common Name

SETIT_015760mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 181aa MW: 21003.9 Da PI: 8.702

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G178400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.6	1.8e-22	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f+ +YA + GF+vrk+++ k+k +g++ + + vC +eg+r e+k++ + ++ +raetrt+C+a + v +++ +g+++vt+l+leHnH l+ Seita.6G178400.1.p 12 FWISYAGQKGFEVRKRYTDKRKSDGKVRSCRCVCANEGHRLEDKRD-HLTKCPRAETRTNCQAPMAVVMDQvKGTYKVTDLVLEHNHILQ 100 999**************************************999.999*************99999*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-18	12	99	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MEFNTKEEAW MFWISYAGQK GFEVRKRYTD KRKSDGKVRS CRCVCANEGH RLEDKRDHLT 60 KCPRAETRTN CQAPMAVVMD QVKGTYKVTD LVLEHNHILQ LPQTSYLMVS QRKISELQGF 120 EIETADDAGI RPKDAHELTS IQVGRSFNLS YTFHDHKNYL WGKHQREMAY GQAGSMLMYF 180 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G178400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025877975.1	1e-104	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	K3YNC0	1e-135	K3YNC0_SETIT; Uncharacterized protein
STRING	Si015760m	1e-136	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-17	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Seita.6G178400.1.p