PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G192200.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 253aa MW: 26375.5 Da PI: 7.7677

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G192200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	1.9e-38	35	92	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +s Seita.6G192200.1.p 35 EGDPCPRCESRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSS 92 6789**************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-27	31	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.425	37	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.8E-32	38	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MQGAAAEPGR RLAQQQFAGV DLRRPKGYAV PAPAEGDPCP RCESRDTKFC YYNNYNTSQP 60 RHFCKGCRRY WTKGGTLRNV PVGGGTRKKP SSSPPSSYAA AANANKPKKP SKKKRRVVVV 120 APQDPVAAPV AAPTLVAAPA ADSAKTTTNE TTTTTTNETT ATTATPTTTD AASEITTELV 180 VPAAEEEDSL AHLLQPDVAL GLGTSDFPAA GKALDLEPDS FEWPAAFDLG GACWGSAGFA 240 DPDPAGLFLN LP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	115	KKKRR
2	111	116	KKKRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G192200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU965859	4e-88	EU965859.1 Zea mays clone 289437 dof zinc finger protein MNB1A mRNA, complete cds.
GenBank	EU969388	4e-88	EU969388.1 Zea mays clone 329608 dof zinc finger protein MNB1A mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973764.1	0.0	dof zinc finger protein MNB1A
Swissprot	P38564	2e-82	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	A0A368RN31	0.0	A0A368RN31_SETIT; Uncharacterized protein
STRING	LPERR08G15690.1	2e-79	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-29	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Seita.6G192200.1.p

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]