PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G194800.1.p
Common NameSETIT_013985mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 345aa    MW: 37434.8 Da    PI: 4.3389
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G194800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-271058250
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        rien++nrqvtfskRrng+ KKA+ELSvLCd++va+++fs++g+l  +s
  Seita.6G194800.1.p 10 RIENTTNRQVTFSKRRNGLVKKAYELSVLCDIDVALLMFSPSGRLSHFS 58
                        8********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.352161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-29283IPR002100Transcription factor, MADS-box
CDDcd002651.52E-37275No hitNo description
PRINTSPR004049.3E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRVKLPIRR IENTTNRQVT FSKRRNGLVK KAYELSVLCD IDVALLMFSP SGRLSHFSGR  60
NGVEDVILRY MNLSEHDRGG AVQNREYLVS MLQRLKREGD MATQLANPGA LSERIKEIQR  120
EIYSSQQQLH ISEERLRLFE PDPAAFSSTS ELDGCEKLLA DLLDRVVQRK NYLLGEHMTP  180
FDPTASGMEG TNGAQMFTDQ QAAEGMGTFA GDAALWAAAD VGSDDPGHQM FGGSDPLIYL  240
SRDQDVYDAT SQADADADAW REEYTCTELL SGLIPATPFP LMPHWLVPDD EFLPMPDGGG  300
GGGGMVAAQE QVEASTASCS YVPSDDAGTP AAAYDSTTAP ANVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-18199192Myocyte-specific enhancer factor 2B
1tqe_Q7e-18199192Myocyte-specific enhancer factor 2B
1tqe_R7e-18199192Myocyte-specific enhancer factor 2B
1tqe_S7e-18199192Myocyte-specific enhancer factor 2B
6c9l_A7e-18199192Myocyte-specific enhancer factor 2B
6c9l_B7e-18199192Myocyte-specific enhancer factor 2B
6c9l_C7e-18199192Myocyte-specific enhancer factor 2B
6c9l_D7e-18199192Myocyte-specific enhancer factor 2B
6c9l_E7e-18199192Myocyte-specific enhancer factor 2B
6c9l_F7e-18199192Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G194800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973793.10.0agamous-like MADS-box protein AGL66 isoform X4
SwissprotQ1PFC21e-68AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A368RN570.0A0A368RN57_SETIT; Uncharacterized protein
STRINGSi013985m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.14e-70AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]