PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G210200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 187aa    MW: 19780.3 Da    PI: 7.608
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G210200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.56e-121967456
                 AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +GVr + + grW+AeIr+p++   r + ++g+f ++  Aa a++aa  +++ge
  Seita.6G210200.1.p 19 TGVRPR-QGGRWAAEIRVPNT---REKLWIGTFESPRLAALAYDAAVFCFYGE 67
                        599855.5899*******944...5**********************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.4E-201784IPR001471AP2/ERF domain
PROSITE profilePS5103218.4921778IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-201778IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-141778IPR016177DNA-binding domain
CDDcd000188.82E-182080No hitNo description
PfamPF008474.6E-62066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
GGGARPGVAP GRQKQSEWTG VRPRQGGRWA AEIRVPNTRE KLWIGTFESP RLAALAYDAA  60
VFCFYGERLP KTRRLNFPVA PTPELPGIVR ARLTVGNVKA IAEQHARTVD ALLPPPGFAA  120
AAPLVVAAAA PVEAAPATYH GVPTAMADNN LVAGAADDSQ FSFDADGTEW ESELEKSYAS  180
VHDPRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G210200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974846.11e-116ethylene-responsive transcription factor ERF011
TrEMBLA0A368RNU81e-131A0A368RNU8_SETIT; Uncharacterized protein (Fragment)
STRINGSi015435m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.11e-18ERF family protein