PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G210300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 160aa    MW: 17824.8 Da    PI: 6.5165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G210300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.7e-162777256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        g +GVr ++ +grW+AeIr+p++   r ++++g f+t +eAa a++aa  +++ge
  Seita.6G210300.1.p 27 GWTGVRLRP-WGRWAAEIRVPYT---REKVWIGVFDTDKEAALAYDAAIFCFYGE 77
                        568******.**********876...5**********************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-162678IPR016177DNA-binding domain
SMARTSM003808.1E-192794IPR001471AP2/ERF domain
PROSITE profilePS5103218.7292788IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-212888IPR001471AP2/ERF domain
PRINTSPR003671.0E-62839IPR001471AP2/ERF domain
PfamPF008471.4E-92976IPR001471AP2/ERF domain
CDDcd000181.14E-183090No hitNo description
PRINTSPR003671.0E-65066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MVRREQAQRV GVQHHSAAAA RQQKRSGWTG VRLRPWGRWA AEIRVPYTRE KVWIGVFDTD  60
KEAALAYDAA IFCFYGEDLP RRRRFNLPAV PHPDIAEDVR HQLSVTDIKD IAKKHARDAL  120
QEEEEEAAAA GPSAGADADA PANTYQGHNP NDMDVDLSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G210300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974847.11e-114ethylene-responsive transcription factor ERF018
TrEMBLA0A368RQJ21e-113A0A368RQJ2_SETIT; Uncharacterized protein
STRINGSi014944m5e-90(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.19e-20ERF family protein