PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G225800.1.p
Common NameLOC101770602, SETIT_014408mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 228aa    MW: 24028.4 Da    PI: 10.4149
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G225800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.46.1e-32201601128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk...rknr.atksgyWkat 86 
                         lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v d+y+++Pwd+p+  +a+e e yfF+ r   + +g       r at+sg+Wk  
  Seita.6G225800.1.p  20 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVpDLYSLDPWDIPA--DASEGEKYFFAVRTAGAGSGCsksGGARaATASGRWKPA 107
                         79****************************.8999999***********4..4567799*****99988855411144566899******* PP

                 NAM  87 gkdkevlsk.....kgelvglkktLvfykgrapkge......ktdWvmheyrl 128
                         gk+k+v+       ++ lvg+k+tL+f + r++k++         Wvmheyrl
  Seita.6G225800.1.p 108 GKEKPVVLPrpcggGSLLVGVKRTLTFVTRRKKKASapsaslGNGWVMHEYRL 160
                         *******99899877777**********55554444333334568******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-4216186IPR003441NAC domain
PROSITE profilePS5100542.71420186IPR003441NAC domain
PfamPF023654.6E-2121160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MESAPVLVRH AGGVAALRQL PPGFRFRPTD EELVVQYLRR KAFGVPLPAA VIPVVPDLYS  60
LDPWDIPADA SEGEKYFFAV RTAGAGSGCS KSGGARAATA SGRWKPAGKE KPVVLPRPCG  120
GGSLLVGVKR TLTFVTRRKK KASAPSASLG NGWVMHEYRL AAPLHKNGCR LGQAEGEWVV  180
CRVFQRSNRP RRRPAPAGAG HDAAASPTSS SASCVTDGSD QEEEVSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-272018817167NO APICAL MERISTEM PROTEIN
1ut4_B1e-272018817167NO APICAL MERISTEM PROTEIN
1ut7_A1e-272018817167NO APICAL MERISTEM PROTEIN
1ut7_B1e-272018817167NO APICAL MERISTEM PROTEIN
3swm_A1e-272018820170NAC domain-containing protein 19
3swm_B1e-272018820170NAC domain-containing protein 19
3swm_C1e-272018820170NAC domain-containing protein 19
3swm_D1e-272018820170NAC domain-containing protein 19
3swp_A1e-272018820170NAC domain-containing protein 19
3swp_B1e-272018820170NAC domain-containing protein 19
3swp_C1e-272018820170NAC domain-containing protein 19
3swp_D1e-272018820170NAC domain-containing protein 19
4dul_A1e-272018817167NAC domain-containing protein 19
4dul_B1e-272018817167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G225800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0865717e-71BT086571.1 Zea mays full-length cDNA clone ZM_BFc0184N14 mRNA, complete cds.
GenBankDQ2454917e-71DQ245491.1 Zea mays clone 16115 mRNA sequence.
GenBankDQ2460957e-71DQ246095.1 Zea mays clone 16151 mRNA sequence.
GenBankEU9709067e-71EU970906.1 Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974022.11e-163NAC domain-containing protein 18
TrEMBLK3YJI91e-162K3YJI9_SETIT; Uncharacterized protein
STRINGSi014408m1e-163(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.19e-27NAC domain containing protein 46