PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G226200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 495aa    MW: 52085.9 Da    PI: 6.5528
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G226200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.62e-061960237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        +++ C+ ++e  + l+C+ +   lC  C  + H        H
  Seita.6G226200.1.p 19 QQWPCDYCGEAAAALHCRADAARLCVACDRHVHAAnalsrkH 60
                        7899*******9******************999545555555 PP
2CCT63.46.8e-22442485144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R+ a++RY+eKrk+R++eK+irYesRK +A++R+RvKGrFvk++
  Seita.6G226200.1.p 442 RDSAMQRYREKRKNRRYEKHIRYESRKLRADTRKRVKGRFVKST 485
                         899***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.841865IPR000315B-box-type zinc finger
SMARTSM003362.3E-111865IPR000315B-box-type zinc finger
CDDcd000216.10E-82165No hitNo description
PfamPF062033.0E-16442484IPR010402CCT domain
PROSITE profilePS5101715.338442484IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MKSGGGGGGG GGGGGGGRQQ WPCDYCGEAA AALHCRADAA RLCVACDRHV HAANALSRKH  60
VRAPLCAGCA GRPAAARVAA PATAAAWGEA AFLCADCCEG ADCDGGAAAR VAVEGFSGCP  120
SAAELAASWG LDLRGGGCGG DGEEEAEDDA FFSVLDYSML GADPELRDLY VPCDPPEGAA  180
HAGGARRLKG EALCDQLAEM ARREADTSHP HQPHSDLSPR TPRRNSAASS GRLPGKMAPP  240
APPPHHPPAA VQEVPLPYTS LLMMASANCT ELIGGHDRMA DDDEQLLWDC APPSVPPTQI  300
WDFNLGRSRD HDEKSSIEVG FGSNHGGFMI KSYSDMLKEI SSGTTKDLED IYDSRYCSTA  360
EDIMSSNICQ VSSKNVSTGS NKRKVSPSTS TMDGPTTSGN HVPTSGPALT REISFGDQTV  420
SPAGAERPAA MRIDSETLAQ NRDSAMQRYR EKRKNRRYEK HIRYESRKLR ADTRKRVKGR  480
FVKSTEALNA GNGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G226200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974025.10.0zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A368RPK40.0A0A368RPK4_SETIT; Uncharacterized protein
STRINGSb07g025940.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.13e-19B-box type zinc finger protein with CCT domain