PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.6G231100.1.p

Common Name

LOC101754126, SETIT_015587mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 380aa MW: 40118 Da PI: 6.4467

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.6G231100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27	9.6e-09	196	254	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+++r + NR +A rs +RK +i+eLe+kv+ ++ e +aL+ +l l+ a l++e+ Seita.6G231100.1.p 196 KKAKRIINNRQSAARSKERKMRYIAELERKVQFMQREATALATQLALLQRDTAGLTAEN 254 89**********************************************99999988887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-14	192	256	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.6E-7	194	245	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.634	194	257	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.4E-9	196	251	No hit	No description
SuperFamily	SSF57959	5.91E-10	196	250	No hit	No description
CDD	cd14703	1.76E-22	197	248	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MNMDTKPIAG GGGGGGGDAE GGGSCAAGNV PAMQSSCDAV APSPAPHTEC DMSRMPDSPV 60 RKPGHRRALS DIIGLPNDLD LGAPGAGDGP VLSDENEEEL FSMFLDVEKL NSRCGASESE 120 SSCAMAGGGG EATQMSAAPG AGLRPRHHQR HSMDASSSID AENLFGTSAM DGVSPVEAKK 180 AMSAAKLAEL ALIDPKKAKR IINNRQSAAR SKERKMRYIA ELERKVQFMQ REATALATQL 240 ALLQRDTAGL TAENSELKLR LQNTEHQVHL QDALNDALKS ELQRLKMATG QMGSGGGAMN 300 FGASPHPFGA NHHHQQMFHP NQAMPPPFAA MQQQQQQLLP NQPLHPLQTQ QAAINLNMKG 360 PAPAPNQWWG DAWSESSSS*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MNMDTKPIAG GGGGGGGDAE GGGSCAAGNV PAMQSSCDAV APSPAPHTEC DMSRMPDSPV  60
RKPGHRRALS DIIGLPNDLD LGAPGAGDGP VLSDENEEEL FSMFLDVEKL NSRCGASESE  120
SSCAMAGGGG EATQMSAAPG AGLRPRHHQR HSMDASSSID AENLFGTSAM DGVSPVEAKK  180
AMSAAKLAEL ALIDPKKAKR IINNRQSAAR SKERKMRYIA ELERKVQFMQ REATALATQL  240
ALLQRDTAGL TAENSELKLR LQNTEHQVHL QDALNDALKS ELQRLKMATG QMGSGGGAMN  300
FGASPHPFGA NHHHQQMFHP NQAMPPPFAA MQQQQQQLLP NQPLHPLQTQ QAAINLNMKG  360
PAPAPNQWWG DAWSESSSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.6G231100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974066.1	0.0	transcription factor RF2a
Swissprot	Q69IL4	1e-106	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	K3YMV4	0.0	K3YMV4_SETIT; Uncharacterized protein
STRING	Si015587m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	8e-72	bZIP family protein

Link Out ? help Back to Top
Phytozome	Seita.6G231100.1.p
Entrez Gene	101754126

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]