PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G234000.1.p
Common NameLOC101764111, SETIT_015026mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 260aa    MW: 27678.4 Da    PI: 7.4656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G234000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13102147454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RRd++N +f eLr  +P+       +++Ka+ L  A  YI +L
  Seita.6G234000.1.p 102 THVEAERQRRDKLNRRFYELRAAVPTV-----SRMDKASLLADAAAYITQL 147
                         799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-1698163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.32698147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-11101152No hitNo description
PfamPF000102.0E-10102147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16102162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-14104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDELVVCPAS TACSSPSPAS FFSTAGHHQQ QQQELDFVSS EVLEQWLAID DCMDDETLMD  60
GAAWGIEGSR SPGNDLSGKP PAPAPKRRGR KPGPGTSGLA LTHVEAERQR RDKLNRRFYE  120
LRAAVPTVSR MDKASLLADA AAYITQLRGR VEQLEAEAKQ AAASAVAAAA TAAAPAQEKL  180
EVRMVGQEAA ALRLTTAARH APARLMLALR SLDLPVQHAC VCRVGSVTVQ DAVVDVPAAA  240
LRDERRLRAA LLNRLQQSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-20101160766Transcription factor MYC2
5gnj_B2e-20101160766Transcription factor MYC2
5gnj_E2e-20101160766Transcription factor MYC2
5gnj_F2e-20101160766Transcription factor MYC2
5gnj_G2e-20101160766Transcription factor MYC2
5gnj_I2e-20101160766Transcription factor MYC2
5gnj_M2e-20101160766Transcription factor MYC2
5gnj_N2e-20101160766Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G234000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974089.10.0transcription factor MYC2
TrEMBLK3YLA30.0K3YLA3_SETIT; Uncharacterized protein
STRINGSi015026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.11e-19bHLH family protein