PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G236100.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 372aa    MW: 39175.3 Da    PI: 6.0101
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G236100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.6e-35451352101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+
  Seita.6G236100.2.p  45 FLTKTYQLVDDPAVDDVISWNDDGSAFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKR 126
                         9*****************************************************************99.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  Seita.6G236100.2.p 127 LLCDIHRRK 135
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-3837129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5941134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.54E-3542134IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.6E-3245134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAAEQAAAAA ATGGEPPPAT PQPADGVAPS AAAGAAVQRS VPTPFLTKTY QLVDDPAVDD  60
VISWNDDGSA FVVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF  120
RRGEKRLLCD IHRRKPPPLQ PQAPSGSGSG GTAASGGGDV GEENDRLRRE NARLARELGQ  180
MKKLCNNILL LMSKYAATQQ LDTAAQQVEA AKAAAAAAGN CSGESSEAAA TPPLLPSVLE  240
LLPSCRGAPA PAAAEPTEAA GTEHGDDDGS KAGARLFGVS IGRKRARDES CNGDDGGVED  300
PVSRGAAEVK AEPVDAPPDH HHHQQQEFKD HATEPPQAWP IYRPRPVYHP LRACNGSAGS  360
AGSDHDGSNS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-263413419129Heat shock factor protein 1
5d5v_B4e-263413419129Heat shock factor protein 1
5d5v_D4e-263413419129Heat shock factor protein 1
5hdg_A4e-264513410110Heat shock factor protein 1
5hdn_A4e-264513410110Heat shock factor protein 1
5hdn_B4e-264513410110Heat shock factor protein 1
5hdn_C4e-264513410110Heat shock factor protein 1
5hdn_D4e-264513410110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G236100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9752201e-124EU975220.1 Zea mays clone 484753 heat shock factor protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677301.11e-162heat shock factor protein 7 isoform X2
SwissprotQ6Z9C81e-128HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A368RPR80.0A0A368RPR8_SETIT; Uncharacterized protein
STRINGPavir.Fb02392.1.p1e-164(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-57HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]