PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.6G240100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 201aa    MW: 21900.8 Da    PI: 10.1882
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.6G240100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.61.5e-14130183558
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                         +r  rk+kNRe+A rsR+R+ a++ eLe++v +L aeN++L+k  eelk+ +++
  Seita.6G240100.1.p 130 RRRERKMKNRESAARSRARRYAYVNELEKEVSALRAENEELRKLCEELKEAAEA 183
                         7889*********************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-9126190IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.45128179IPR004827Basic-leucine zipper domain
PfamPF001704.7E-12130182IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-10130179No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-12130182No hitNo description
PROSITE patternPS000360134148IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MRAFPLEKNR APFTFPDKKN RVPSPAGYLL AHWPCLAGCR EVKGLDSSAS RSGQHGGRAK  60
RGMEPERGDA AELLVWGTTG AGNNDDGAAA ACLCPAAVAA APGSVFPRHA LEQEMLRRGD  120
LQLQGGVGDR RRERKMKNRE SAARSRARRY AYVNELEKEV SALRAENEEL RKLCEELKEA  180
AEAPAKKANQ RLQRTSSATF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.6G240100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974151.11e-143ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBLA0A368RQ891e-142A0A368RQ89_SETIT; Uncharacterized protein
STRINGSi014546m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151931719