PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G017500.1.p
Common NameSETIT_012058mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 185aa    MW: 20322.7 Da    PI: 7.9939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G017500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM591.6e-18181469127
                 NAM   9 PtdeelvveyLkkkvegkklelee..vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkd 89 
                         P+d+ l+  +L+ k+ g+ l+++   +++++diy ++P +L +      + k+e  +w+fF+  + k++t++rk+r++   +g+W++    
  Seita.7G017500.1.p  18 PSDDRLL-SFLRLKLGGEALPAAAgaHFHDCDIYAADPATLTAgylpalERKGEGYSWFFFTFVRPKSSTDSRKKRMVGggAGTWHSERAP 107
                         9999999.99********966643225**************8557775544445559*******************87645889******* PP

                 NAM  90 kevlskkgelvglkktLvfykg.rapkgektdWvmheyr 127
                         ++vl+ +g+ vg  + + + ++  ++ +e+tdW m e++
  Seita.7G017500.1.p 108 RAVLDGEGNCVGHTQYFSYKRKtGKSCSERTDWYMVEFT 146
                         *****9**************663566779********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.07310171IPR003441NAC domain
PfamPF023652.9E-817145IPR003441NAC domain
SuperFamilySSF1019412.35E-2318170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MATLAADTPQ PDDPAPTPSD DRLLSFLRLK LGGEALPAAA GAHFHDCDIY AADPATLTAG  60
YLPALERKGE GYSWFFFTFV RPKSSTDSRK KRMVGGGAGT WHSERAPRAV LDGEGNCVGH  120
TQYFSYKRKT GKSCSERTDW YMVEFTDGQE GDHDRIHGGE PVLVLCKIYK AHSDSGLNQR  180
RRRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G017500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961531.11e-98uncharacterized protein LOC101760926 isoform X3
TrEMBLK3YCV71e-134K3YCV7_SETIT; Uncharacterized protein
STRINGSi012058m1e-135(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16781612