PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G021500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 253aa    MW: 26949.4 Da    PI: 7.5646
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G021500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05113135123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C++C + F++   L  H+++H
  Seita.7G021500.1.p 113 YTCSYCRREFRSAQALGGHMNVH 135
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.51E-6111140No hitNo description
PfamPF139126.2E-7113136IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.406113140IPR007087Zinc finger, C2H2
SMARTSM003550.0053113135IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAAIALTVSW LLHQLHAAIV LGMHSLSIHL PNILATVAKQ CALEKQEQIE ETSHANYTGH  60
HNTTPAGHPP TMEGRDRGRG LKQLPSWTLG QNFSLAGGCF PWRSLPSSSS SSYTCSYCRR  120
EFRSAQALGG HMNVHRRDRA RLRQCCPAWT SSSLPSTTNM AAAAPQQHRD PLPNLNYSPP  180
HCAGGPTAAA EAPVIYSFFS TATSTVVAAA TKPTTTLEVS LELGIGVCGG HSGEGLAEEG  240
LDLELRLGCA WE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G021500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9591933e-39EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975075.21e-131transcriptional regulator SUPERMAN
TrEMBLA0A368RR520.0A0A368RR52_SETIT; Uncharacterized protein
STRINGSi011797m1e-147(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.17e-17zinc finger protein 11