PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G033900.5.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 715aa    MW: 82393.1 Da    PI: 6.0015
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G033900.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.68.4e-18149229290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         f n Y+  +GF v+k  ++k+      +k tfvC+k+ k + +++  +k+rr++a ++tgC+ k+ vk+  +g+we++++++eHnH+l+
  Seita.7G033900.5.p 149 FLNVYGLLTGFVVKKGCNYKH------KKITFVCNKSSKMKVTETG-QKKRRSNAIEKTGCRMKVLVKLV-EGRWEIKTVVNEHNHPLM 229
                         8899***************99......5678***********9999.9**********************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-15149229IPR004330FAR1 DNA binding domain
PfamPF105515.3E-24353448IPR018289MULE transposase domain
PROSITE profilePS509669.569639675IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017650677IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MDVRVIEINK KRAMEGMCAR SVLVLPIPDQ AMTGQVREAQ RTAEKESDVA MVAEELPVFQ  60
LNCTEGNTLS EIQGPEAAVT SAQDPEQDGG DHVSNDEEND DFKGCQKDRT EAEVDGDEDY  120
FFPSVEDVEK ARPPEVGMVF PTLQDAHRFL NVYGLLTGFV VKKGCNYKHK KITFVCNKSS  180
KMKVTETGQK KRRSNAIEKT GCRMKVLVKL VEGRWEIKTV VNEHNHPLMS SPSLSTFFIS  240
HKYMSEEERI FSRILQESKI KPSQIMEIFK KLRSRLKHIP VRKMDANSLK QSDSQMEIRN  300
TDIEITLEHV RRFQMEQPGF FYAIKTDDRN TVRSIFWTDA RARLDYALYG DFISFDTSYT  360
TREHNMLFAP LIGINGHGKA IVFGWGLLEN EMADKADTFS WLLRTFLDVM DGKKPTTIIT  420
DQGSAMTKSI AEVFPTVFHR FSMWHVMRKA REIFEDFMEN GPVMEADLTC LIANCLTIEE  480
FEDGWKTMLE KYDAPPNEDL NLMYQTRLMW VPVYFKHAFC PFIRSTGRSE STDTIFKEHG  540
LRKDAIENFF CQYDIFQKNV ISPEDGYGLE STQKKTMYCT RQPIERHAAE VYTMGMFLKF  600
QKELLDASAF NVFEIESGRV YAVKKTLDYE EAEFPGDSFS VEVDLGNNMF NCICSKFERD  660
GMLCCHVLRL LTQFGVNVIP ENYIRQRWTK KFREELQKLH GTEKTRSTVS QNAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G033900.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684349.10.0protein FAR1-RELATED SEQUENCE 5 isoform X4
TrEMBLA0A368RRS40.0A0A368RRS4_SETIT; Uncharacterized protein
STRINGSi009620m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-79FAR1-related sequence 5