PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G054200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 394aa    MW: 43182.7 Da    PI: 9.021
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G054200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.68.3e-12221051299
                         HTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + + l++p + a+e+g  +     ++  + +g   ++W v++   + +g+ +l++GW eF++a g+++g  +v+++    ++ l+vk+f++
  Seita.7G054200.1.p  22 SCDTLRIPDELAAEIGAGQ---ALVVCPSGTGgkvKVWPVEV--GRDGGGAFLGSGWPEFAEASGVEAGWLLVLRHR--GRGVLTVKAFDA 105
                         557899*********7552...2355555444899*******..9******************************65..567779999987 PP
2B350.83.1e-163073821086
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                         + ++ +  lp  f++++g ++++++t +   +s  sW+v +    ++g+ + l++GW++F+++n++kegD+++F  ++
  Seita.7G054200.1.p 307 TIRKYIQPLPAAFCNAIGFQEACTITFKTSLSSTSSWQVHV--LPYKGSsHQLGSGWRRFCQENKIKEGDVCTFNIID 382
                         455555679*********9*99976666666888*******..444444499**********************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00518106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-1122107IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-922105IPR003340B3 DNA binding domain
CDDcd100175.13E-722104No hitNo description
SuperFamilySSF1019362.55E-1124108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.51654106IPR003340B3 DNA binding domain
PROSITE profilePS508639.502132228IPR003340B3 DNA binding domain
SMARTSM010190.002135228IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-14135230IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-10136225No hitNo description
SuperFamilySSF1019362.35E-15138230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.182298393IPR003340B3 DNA binding domain
SMARTSM010190.02299393IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-16303392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-16309392IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-9315378No hitNo description
PfamPF023622.1E-13315389IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MASSGDQWAS KAKNPRVLLQ FSCDTLRIPD ELAAEIGAGQ ALVVCPSGTG GKVKVWPVEV  60
GRDGGGAFLG SGWPEFAEAS GVEAGWLLVL RHRGRGVLTV KAFDASRCLR VLGATTPPEV  120
EATVSSRDDA RKQQFISAHP TNFMEKMLIP AKFVQQYLPK EHLNNQSAIV LGPIGKVHSI  180
KLEMGQSDLF FAGGWSQFLA FHDITEANAL LLRYEGNMVF TVKIFGPNGC PIESKHKEVR  240
VPQNIEEQQE APSASIQKCC ENDLPISDGE KKPQGSITSL KKASPRVKCI YKIGPPAWIR  300
KEMSTKTIRK YIQPLPAAFC NAIGFQEACT ITFKTSLSST SSWQVHVLPY KGSSHQLGSG  360
WRRFCQENKI KEGDVCTFNI IDSTLWHVVI ARR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G054200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683932.10.0putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A368RSM00.0A0A368RSM0_SETIT; Uncharacterized protein
STRINGSi010026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-13B3 family protein