PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G054200.4.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 386aa    MW: 42285.5 Da    PI: 8.8812
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G054200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.68e-12221051299
                         HTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + + l++p + a+e+g  +     ++  + +g   ++W v++   + +g+ +l++GW eF++a g+++g  +v+++    ++ l+vk+f++
  Seita.7G054200.4.p  22 SCDTLRIPDELAAEIGAGQ---ALVVCPSGTGgkvKVWPVEV--GRDGGGAFLGSGWPEFAEASGVEAGWLLVLRHR--GRGVLTVKAFDA 105
                         557899*********7552...2355555444899*******..9******************************65..567779999987 PP
2B350.83e-162993741086
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                         + ++ +  lp  f++++g ++++++t +   +s  sW+v +    ++g+ + l++GW++F+++n++kegD+++F  ++
  Seita.7G054200.4.p 299 TIRKYIQPLPAAFCNAIGFQEACTITFKTSLSSTSSWQVHV--LPYKGSsHQLGSGWRRFCQENKIKEGDVCTFNIID 374
                         455555679*********9*99976666666888*******..444444499**********************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00518106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-1122107IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-922105IPR003340B3 DNA binding domain
CDDcd100174.55E-722104No hitNo description
SuperFamilySSF1019362.35E-1124108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.51654106IPR003340B3 DNA binding domain
SMARTSM010190.025135220IPR003340B3 DNA binding domain
PROSITE profilePS508637.937140220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-10140222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-7140217No hitNo description
SuperFamilySSF1019362.16E-11146222IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.182290385IPR003340B3 DNA binding domain
SMARTSM010190.02291385IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-16295384IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-16301384IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-9307370No hitNo description
PfamPF023622.0E-13307381IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MASSGDQWAS KAKNPRVLLQ FSCDTLRIPD ELAAEIGAGQ ALVVCPSGTG GKVKVWPVEV  60
GRDGGGAFLG SGWPEFAEAS GVEAGWLLVL RHRGRGVLTV KAFDASRCLR VLGATTPPEV  120
EATVSSRDDA RKQQFISAHP TNFMEKMQYL PKEHLNNQSA IVLGPIGKVH SIKLEMGQSD  180
LFFAGGWSQF LAFHDITEAN ALLLRYEGNM VFTVKIFGPN GCPIESKHKE VRVPQNIEEQ  240
QEAPSASIQK CCENDLPISD GEKKPQGSIT SLKKASPRVK CIYKIGPPAW IRKEMSTKTI  300
RKYIQPLPAA FCNAIGFQEA CTITFKTSLS STSSWQVHVL PYKGSSHQLG SGWRRFCQEN  360
KIKEGDVCTF NIIDSTLWHV VIARR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G054200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975299.10.0putative B3 domain-containing protein Os04g0347400 isoform X3
TrEMBLA0A368RSG30.0A0A368RSG3_SETIT; Uncharacterized protein
STRINGSi010026m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.19e-12B3 family protein