PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G054300.1.p
Common NameSETIT_010378mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 122aa    MW: 13596.8 Da    PI: 10.3596
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G054300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.63.9e-12461102186
                         HH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3  21 kfaeehggkkeesktltledesg..rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                         +f++++g  k++  ++tl+d+ g   sW+v+     ++++ + l++GWk+ +++ gLk gD++++k+++
  Seita.7G054300.1.p  46 PFCNAIGFRKRC--MITLQDSMGstSSWQVRG--LPYKNGgCQLGSGWKKVCQDTGLKYGDVITLKVIK 110
                         688888888777..7*****998889*****9..333333377**********************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-1246120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-1246120IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-946110IPR003340B3 DNA binding domain
PROSITE profilePS508639.5359121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MNNWPDTDGQ RRPKGFVTPS KKKKNKSSET NCAYDLGPPA CLYRAPFCNA IGFRKRCMIT  60
LQDSMGSTSS WQVRGLPYKN GGCQLGSGWK KVCQDTGLKY GDVITLKVIK TRLWDVIIMR  120
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G054300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368RSH92e-84A0A368RSH9_SETIT; Uncharacterized protein
STRINGSi010378m2e-70(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187