PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G054400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 225aa    MW: 24429.2 Da    PI: 9.0369
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G054400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.73.6e-12231011198
                         HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         ++++ l++p + a+e+  +     +  +  +++++W+v + +   +++ +l++GW+ F+ a g+++g f+v+++  rs++ l++k+f+
  Seita.7G054400.1.p  23 FTRDSLRIPDELAAEIAAE-----EALVVGSHSKVWRVGIGW--DGDGALLGRGWRAFAAACGVESGWFLVLRH--RSRGLLTLKAFD 101
                         57889********999755.....578899**********54..444589***********************4..567767887776 PP
2B336.39.9e-121412221294
                         HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3  12 ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         + g + +p +fa+++  +++ +++++++  + g++  ++l  + +++++++++GW++F   +g+ e D ++++++g++ f+ +v
  Seita.7G054400.1.p 141 SMGKMLIPARFAQHYiPKDHLNNRMVIISGPLGKVCPIEL--EMNQSSMFFAGGWSQFMAFHGITEADALLLRYEGNMAFTIKV 222
                         55779*******888966667788999999**********..88888899****************************996554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.31913103IPR003340B3 DNA binding domain
SMARTSM010190.1920103IPR003340B3 DNA binding domain
PfamPF023625.6E-923101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-924103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-1026105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-14128223IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.925130224IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-15131223IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.015133224IPR003340B3 DNA binding domain
PfamPF023628.8E-10140222IPR003340B3 DNA binding domain
CDDcd100173.18E-11141223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MASSSSGCHG AATAKHRCVL LRFTRDSLRI PDELAAEIAA EEALVVGSHS KVWRVGIGWD  60
GDGALLGRGW RAFAAACGVE SGWFLVLRHR SRGLLTLKAF DDDRCLTELG AQTTAPAVEA  120
TTNYKGASRK PQFINVFPTK SMGKMLIPAR FAQHYIPKDH LNNRMVIISG PLGKVCPIEL  180
EMNQSSMFFA GGWSQFMAFH GITEADALLL RYEGNMAFTI KVLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G054400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683952.11e-167putative B3 domain-containing protein Os04g0347400
SwissprotQ7XS748e-51Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A368RS651e-165A0A368RS65_SETIT; Uncharacterized protein
STRINGSi010378m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31615.11e-06B3 family protein